PhylogeneticWebService
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Phylogenetic Webservice
Group Members: Armin
Wednesday, 12.01.2012
~ Assessment of existing services and online-tree-generators from bio-informatics
- http://molbiol-tools.ca/Phylogeny.htm, http://itol.embl.de/
- How do they implement it, what are their input/output formats
- => For a simple webservice from scratch in 2.5 days, input, output can be limited but GUI should already include all formats.
- Input format: aligned table structure (later on tei and nexus)
- output format: Newick (later on visual rendering)
~architecture
- server should use java for computation
~usable programms already written
- integrated distance matrix computation (Levenshtein) from tablestructure
~next steps: setting upm server; setting up "hello world" webservice without functionality; plugging in java-progs